{ "cells": [ { "cell_type": "markdown", "id": "7f3dca63-dbd1-49a0-99ee-9a385525be3f", "metadata": {}, "source": [ "# State-resolved gamma calculations (legacy)\n", "17/07/24" ] }, { "cell_type": "markdown", "id": "ee235ef5-709d-4497-8e27-688d21b693fe", "metadata": {}, "source": [ "For legacy calculations, making use of state-to-state $\\gamma$ and $C$ parameters, some basic routines are available in :py:module:`epsproc.geomCalc.gamma`.\n", "\n", "These currently:\n", "\n", "- Read gamma params from file (as generated by legacy C-codes).\n", " - Note there are various flavours of the C-codes, and currently need cleaning up.\n", " - Testing with NH3 version `ion_rot_gamma_nh3_4d_NS.c`, which includes 1-photon density matrix and symmetry selection rules in output; spin is also neglected (terms coupling $S$ are omitted.)\n", " - TODO: tidy codes & generalise.\n", "- Implement multiplication by matrix elements & density matrix for $\\beta_{L,M}$ computations.\n", " - TODO: implement conversion from standard matE format to PD table required here. \n", "\n", "In this case, the parameters and computations are defined as per Refs. [1,2], in particular Ref. [2], Sect 3.1:\n", "\n", "$$\n", "\\begin{eqnarray}\n", "C(lm\\lambda N_{t}M_{i}\\mu_{\\lambda}) & = & (2N_{t}+1)(-1)^{M_{+}+q}\\left(\\begin{array}{ccc}\n", "N_{t} & 1 & l\\\\\n", "M_{t} & p & m\n", "\\end{array}\\right)\\left(\\begin{array}{ccc}\n", "N_{+} & N_{i} & N_{t}\\\\\n", "-M_{+} & M_{i} & M_{t}\n", "\\end{array}\\right)\\nonumber \\\\\n", " & \\mathsf{x} & \\left(\\begin{array}{ccc}\n", "N_{+} & N_{i} & N_{t}\\\\\n", "-K_{+} & K_{i} & K_{t}\n", "\\end{array}\\right)\\left(\\begin{array}{ccc}\n", "N_{t} & 1 & l\\\\\n", "-K_{t} & q & -\\lambda\n", "\\end{array}\\right)\\nonumber \\\\\n", " & \\mathsf{x} & \\left(\\begin{array}{ccc}\n", "N_{+} & J_{+} & S_{+}\\\\\n", "M_{+} & M_{J+} & M_{S+}\n", "\\end{array}\\right)\\left(\\begin{array}{ccc}\n", "N_{+} & J_{+} & S_{+}\\\\\n", "K_{+} & P_{+} & \\Sigma_{+}\n", "\\end{array}\\right)\\label{eq:geom-params-C}\n", "\\end{eqnarray}\n", "$$\n", "\n", "$$\n", "\\begin{eqnarray}\n", "\\gamma_{\\alpha\\alpha_{+}l\\lambda ml'\\lambda'm'} & = & (2N_{i}+1)(2N_{+}+1)(-i)^{l'-l}\\sum_{M_{+}}\\sum_{M_{i}M_{i}'}\\sum_{N_{t}N_{t}'}\\sum_{\\mu_{\\lambda}\\mu_{\\lambda}'}{}^{J_{i}K_{i}}\\boldsymbol{\\rho}_{M_{i}M_{i}'}\\nonumber \\\\\n", " & \\mathsf{x} & C(lm\\lambda N_{t}M_{i}q)C(l'm'\\lambda'N_{t}'M_{i}'q')\\label{eq:gamma-state}\n", "\\end{eqnarray}\n", "$$\n", "\n", "This form allows for:\n", "\n", "- Angular momentum transfer between initial ($_i$) and final ($_+$) states, with transfer terms denoted by subscript $t$.\n", "- Modulation by initial $M$-state distribution, expressed as a density matrix $\\boldsymbol{\\rho}_{M_{i}M_{i}'}$.\n", "- Cf. aligned-frame case, which assumes a _decoupled_ rotational wavepacket, and is derived from a sum over $J,M$ states (see Ref. [3] for further details).\n", "\n", "\n", "Refs:\n", "\n", "1. Hockett, Paul. 2009. “Photoionization Dynamics of Polyatomic Molecules.” PhD Thesis, University of Nottingham. http://eprints.nottingham.ac.uk/10857/.\n", "2. ———. 2018. Quantum Metrology with Photoelectrons, Volume 1: Foundations. IOP Publishing. https://doi.org/10.1088/978-1-6817-4684-5.\n", "3. Stolow, Albert, and Jonathan G. Underwood. 2008. “Time-Resolved Photoelectron Spectroscopy of Non-Adiabatic Dynamics in Polyatomic Molecules.” In Advances in Chemical Physics, edited by Stuart A. Rice, 139:497–584. Advances in Chemical Physics. Hoboken, NJ, USA: John Wiley & Sons, Inc. https://doi.org/10.1002/9780470259498.ch6.\n", "\n" ] }, { "cell_type": "markdown", "id": "9242a78a-0f1b-4cb0-b20c-645e638d32bd", "metadata": {}, "source": [ "## Gamma calc demo" ] }, { "cell_type": "code", "execution_count": 1, "id": "887e9e33-3f1d-40c6-a7f3-5aed207d8a1c", "metadata": { "tags": [] }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "OMP: Info #276: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "* sparse not found, sparse matrix forms not available. \n", "* natsort not found, some sorting functions not available. \n" ] }, { "data": { "application/javascript": [ "(function(root) {\n", " function now() {\n", " return new Date();\n", " }\n", "\n", " var force = true;\n", " var py_version = '3.1.1'.replace('rc', '-rc.').replace('.dev', '-dev.');\n", " var is_dev = py_version.indexOf(\"+\") !== -1 || 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but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n Bokeh = root.Bokeh;\n bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n if (!reloading && (!bokeh_loaded || is_dev)) {\n\troot.Bokeh = undefined;\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n\trun_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));" }, "metadata": {}, "output_type": "display_data" }, { "data": { "application/javascript": 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catch(err) {\n", " }\n", "}\n" ], "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } else {\n window.PyViz.plot_index[id] = null;\n }\n } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n var bk_div = document.createElement(\"div\");\n bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n var script_attrs = bk_div.children[0].attributes;\n for (var i = 0; i < script_attrs.length; i++) {\n toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n }\n // store reference to server id on output_area\n output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n var id = handle.cell.output_area._hv_plot_id;\n var server_id = handle.cell.output_area._bokeh_server_id;\n if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n" }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "* Setting plotter defaults with epsproc.basicPlotters.setPlotters(). Run directly to modify, or change options in local env.\n" ] }, { "data": { "application/javascript": [ "(function(root) {\n", " function now() {\n", " return new Date();\n", " }\n", "\n", " var force = true;\n", " var py_version = '3.1.1'.replace('rc', '-rc.').replace('.dev', '-dev.');\n", " var is_dev = py_version.indexOf(\"+\") !== -1 || py_version.indexOf(\"-\") !== -1;\n", " var reloading = true;\n", " var Bokeh = root.Bokeh;\n", " var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n", "\n", " if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n", " root._bokeh_timeout = Date.now() + 5000;\n", " root._bokeh_failed_load = false;\n", " }\n", "\n", " function run_callbacks() {\n", " try {\n", " root._bokeh_onload_callbacks.forEach(function(callback) {\n", " if (callback != null)\n", " callback();\n", " });\n", " } finally {\n", " delete root._bokeh_onload_callbacks;\n", " }\n", " console.debug(\"Bokeh: all callbacks have finished\");\n", " }\n", "\n", " function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n", " if (css_urls == null) css_urls = [];\n", " if (js_urls == null) js_urls = [];\n", " if (js_modules == null) js_modules = [];\n", " if (js_exports == null) js_exports = {};\n", "\n", " root._bokeh_onload_callbacks.push(callback);\n", "\n", " if (root._bokeh_is_loading > 0) {\n", " console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n", " return null;\n", " }\n", " if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n", " run_callbacks();\n", " return null;\n", " }\n", " if (!reloading) {\n", " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n", " }\n", "\n", " function on_load() {\n", " root._bokeh_is_loading--;\n", " if (root._bokeh_is_loading === 0) {\n", " console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n", " run_callbacks()\n", " }\n", " }\n", " window._bokeh_on_load = on_load\n", "\n", " function on_error() {\n", " console.error(\"failed to load \" + url);\n", " }\n", "\n", " var skip = [];\n", " if (window.requirejs) {\n", " window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n", " require([\"jspanel\"], function(jsPanel) {\n", "\twindow.jsPanel = jsPanel\n", "\ton_load()\n", " })\n", " require([\"jspanel-modal\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-tooltip\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-hint\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-layout\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-contextmenu\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-dock\"], function() {\n", "\ton_load()\n", " })\n", " require([\"gridstack\"], function(GridStack) {\n", "\twindow.GridStack = GridStack\n", "\ton_load()\n", " })\n", " require([\"notyf\"], function() {\n", "\ton_load()\n", " })\n", " root._bokeh_is_loading = css_urls.length + 9;\n", " } else {\n", " root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n", " }\n", "\n", " var existing_stylesheets = []\n", " var links = document.getElementsByTagName('link')\n", " for (var i = 0; i < links.length; i++) {\n", " var link = links[i]\n", " if (link.href != null) {\n", "\texisting_stylesheets.push(link.href)\n", " }\n", " }\n", " for (var i = 0; i < css_urls.length; i++) {\n", " var url = css_urls[i];\n", " if (existing_stylesheets.indexOf(url) !== -1) {\n", "\ton_load()\n", "\tcontinue;\n", " }\n", " const element = document.createElement(\"link\");\n", " element.onload = on_load;\n", " element.onerror = on_error;\n", " element.rel = \"stylesheet\";\n", " element.type = \"text/css\";\n", " element.href = url;\n", " console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n", " document.body.appendChild(element);\n", " } if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n", " var urls = ['https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n", " for (var i = 0; i < urls.length; i++) {\n", " skip.push(urls[i])\n", " }\n", " } if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n", " var urls = ['https://cdn.holoviz.org/panel/1.2.0/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n", " for (var i = 0; i < urls.length; i++) {\n", " skip.push(urls[i])\n", " }\n", " } if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n", " var urls = ['https://cdn.holoviz.org/panel/1.2.0/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n", " for (var i = 0; i < urls.length; i++) {\n", " skip.push(urls[i])\n", " }\n", " } var existing_scripts = []\n", " var scripts = document.getElementsByTagName('script')\n", " for (var i = 0; i < scripts.length; i++) {\n", " var script = scripts[i]\n", " if (script.src != null) {\n", "\texisting_scripts.push(script.src)\n", " }\n", " }\n", " for (var i = 0; i < js_urls.length; i++) {\n", " var url = js_urls[i];\n", " if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n", "\tif (!window.requirejs) {\n", "\t on_load();\n", "\t}\n", "\tcontinue;\n", " }\n", " var element = document.createElement('script');\n", " element.onload = on_load;\n", " element.onerror = on_error;\n", " element.async = false;\n", " element.src = url;\n", " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", " document.head.appendChild(element);\n", " }\n", " for (var i = 0; i < js_modules.length; i++) {\n", " var url = js_modules[i];\n", " if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n", "\tif (!window.requirejs) {\n", "\t on_load();\n", "\t}\n", "\tcontinue;\n", " }\n", " var element = document.createElement('script');\n", " element.onload = on_load;\n", " element.onerror = on_error;\n", " element.async = false;\n", " element.src = url;\n", " element.type = \"module\";\n", " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", " document.head.appendChild(element);\n", " }\n", " for (const name in js_exports) {\n", " var url = js_exports[name];\n", " if (skip.indexOf(url) >= 0 || root[name] != null) {\n", "\tif (!window.requirejs) {\n", "\t on_load();\n", "\t}\n", "\tcontinue;\n", " }\n", " var element = document.createElement('script');\n", " element.onerror = on_error;\n", " element.async = false;\n", " element.type = \"module\";\n", " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", " element.textContent = `\n", " import ${name} from \"${url}\"\n", " window.${name} = ${name}\n", " window._bokeh_on_load()\n", " `\n", " document.head.appendChild(element);\n", " }\n", " if (!js_urls.length && !js_modules.length) {\n", " on_load()\n", " }\n", " };\n", "\n", " function inject_raw_css(css) {\n", " const element = document.createElement(\"style\");\n", " element.appendChild(document.createTextNode(css));\n", " document.body.appendChild(element);\n", " }\n", "\n", " var js_urls = [];\n", " var js_modules = [];\n", " var js_exports = {};\n", " var css_urls = [];\n", " var inline_js = [ function(Bokeh) {\n", " Bokeh.set_log_level(\"info\");\n", " },\n", "function(Bokeh) {} // ensure no trailing comma for IE\n", " ];\n", "\n", " function run_inline_js() {\n", " if ((root.Bokeh !== undefined) || (force === true)) {\n", " for (var i = 0; i < inline_js.length; i++) {\n", " inline_js[i].call(root, root.Bokeh);\n", " }\n", " // Cache old bokeh versions\n", " if (Bokeh != undefined && !reloading) {\n", "\tvar NewBokeh = root.Bokeh;\n", "\tif (Bokeh.versions === undefined) {\n", "\t Bokeh.versions = new Map();\n", "\t}\n", "\tif (NewBokeh.version !== Bokeh.version) {\n", "\t Bokeh.versions.set(NewBokeh.version, NewBokeh)\n", "\t}\n", "\troot.Bokeh = Bokeh;\n", " }} else if (Date.now() < root._bokeh_timeout) {\n", " setTimeout(run_inline_js, 100);\n", " } else if (!root._bokeh_failed_load) {\n", " console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n", " root._bokeh_failed_load = true;\n", " }\n", " root._bokeh_is_initializing = false\n", " }\n", "\n", " function load_or_wait() {\n", " // Implement a backoff loop that tries to ensure we do not load multiple\n", " // versions of Bokeh and its dependencies at the same time.\n", " // In recent versions we use the root._bokeh_is_initializing flag\n", " // to determine whether there is an ongoing attempt to initialize\n", " // bokeh, however for backward compatibility we also try to ensure\n", " // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n", " // before older versions are fully initialized.\n", " if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n", " root._bokeh_is_initializing = false;\n", " root._bokeh_onload_callbacks = undefined;\n", " console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n", " load_or_wait();\n", " } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n", " setTimeout(load_or_wait, 100);\n", " } else {\n", " Bokeh = root.Bokeh;\n", " bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n", " root._bokeh_is_initializing = true\n", " root._bokeh_onload_callbacks = []\n", " if (!reloading && (!bokeh_loaded || is_dev)) {\n", "\troot.Bokeh = undefined;\n", " }\n", " load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n", "\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n", "\trun_inline_js();\n", " });\n", " }\n", " }\n", " // Give older versions of the autoload script a head-start to ensure\n", " // they initialize before we start loading newer version.\n", " setTimeout(load_or_wait, 100)\n", "}(window));" ], "application/vnd.holoviews_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n var force = true;\n var py_version = '3.1.1'.replace('rc', '-rc.').replace('.dev', '-dev.');\n var is_dev = py_version.indexOf(\"+\") !== -1 || py_version.indexOf(\"-\") !== -1;\n var reloading = true;\n var Bokeh = root.Bokeh;\n var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n\n if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n run_callbacks();\n return null;\n }\n if (!reloading) {\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error() {\n console.error(\"failed to load \" + url);\n }\n\n var skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n require([\"jspanel\"], function(jsPanel) {\n\twindow.jsPanel = jsPanel\n\ton_load()\n })\n require([\"jspanel-modal\"], function() {\n\ton_load()\n })\n require([\"jspanel-tooltip\"], function() {\n\ton_load()\n })\n require([\"jspanel-hint\"], function() {\n\ton_load()\n })\n require([\"jspanel-layout\"], function() {\n\ton_load()\n })\n require([\"jspanel-contextmenu\"], function() {\n\ton_load()\n })\n require([\"jspanel-dock\"], function() {\n\ton_load()\n })\n require([\"gridstack\"], function(GridStack) {\n\twindow.GridStack = GridStack\n\ton_load()\n })\n require([\"notyf\"], function() {\n\ton_load()\n })\n root._bokeh_is_loading = css_urls.length + 9;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n var existing_stylesheets = []\n var links = document.getElementsByTagName('link')\n for (var i = 0; i < links.length; i++) {\n var link = links[i]\n if (link.href != null) {\n\texisting_stylesheets.push(link.href)\n }\n }\n for (var i = 0; i < css_urls.length; i++) {\n var url = css_urls[i];\n if (existing_stylesheets.indexOf(url) !== -1) {\n\ton_load()\n\tcontinue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.2.0/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 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setTimeout(load_or_wait, 100);\n } else {\n Bokeh = root.Bokeh;\n bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n if (!reloading && (!bokeh_loaded || is_dev)) {\n\troot.Bokeh = undefined;\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n\trun_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));" }, "metadata": {}, "output_type": "display_data" }, { "data": { "application/javascript": [ "\n", "if ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n", " window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n", "}\n", "\n", "\n", " 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newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n", " oldScript.parentNode.replaceChild(newScript, oldScript);\n", " });\n", " if (JS_MIME_TYPE in output.data) {\n", " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n", " }\n", " output_area._hv_plot_id = id;\n", " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n", " window.PyViz.plot_index[id] = Bokeh.index[id];\n", " } else {\n", " window.PyViz.plot_index[id] = null;\n", " }\n", " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n", " var bk_div = document.createElement(\"div\");\n", " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n", " var script_attrs = bk_div.children[0].attributes;\n", " for (var i = 0; i < script_attrs.length; i++) {\n", " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n", " }\n", " // store reference to server id on output_area\n", " output_area._bokeh_server_id = 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toinsert\n", " }\n", "\n", " events.on('output_added.OutputArea', handle_add_output);\n", " events.on('output_updated.OutputArea', handle_update_output);\n", " events.on('clear_output.CodeCell', handle_clear_output);\n", " events.on('delete.Cell', handle_clear_output);\n", " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n", "\n", " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n", " safe: true,\n", " index: 0\n", " });\n", "}\n", "\n", "if (window.Jupyter !== undefined) {\n", " try {\n", " var events = require('base/js/events');\n", " var OutputArea = require('notebook/js/outputarea').OutputArea;\n", " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n", " register_renderer(events, OutputArea);\n", " }\n", " } catch(err) {\n", " }\n", "}\n" ], "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = 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"metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "* Set Holoviews with bokeh.\n", "* pyevtk not found, VTK export not available. \n" ] } ], "source": [ "# Load functions\n", "from epsproc.geomFunc.gamma import gammaIO, gammaCalc" ] }, { "cell_type": "code", "execution_count": 2, "id": "38ebe550-dd4b-43b3-8dfd-1c9982250e5e", "metadata": { "tags": [] }, "outputs": [ { "data": { "text/html": [ "
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gammabetaTerm
LMl1lambda1ml1l2lambda2ml2
000000000.0740741.000000
200002-200.0159231.000000
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000.0039301.000000
100.0191141.000000
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684 rows × 2 columns

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" ], "text/plain": [ " gamma betaTerm\n", "L M l1 lambda1 ml1 l2 lambda2 ml2 \n", "0 0 0 0 0 0 0 0 0.074074 1.000000\n", "2 0 0 0 0 2 -2 0 0.015923 1.000000\n", " -1 0 0.019114 1.000000\n", " 0 0 0.003930 1.000000\n", " 1 0 0.019114 1.000000\n", "... ... ...\n", "6 0 4 2 0 4 2 0 0.000617 0.504273\n", "0 0 4 2 1 4 2 1 0.000386 1.000000\n", "2 0 4 2 1 4 2 1 0.000386 0.493677\n", "4 0 4 2 1 4 2 1 0.000386 0.242757\n", "6 0 4 2 1 4 2 1 0.000386 -0.025214\n", "\n", "[684 rows x 2 columns]" ] }, "execution_count": 2, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Load gamma data from file\n", "fileIn = \"g_0-0_2-1_1-0_o.dat\"\n", "gammaDF = gammaIO.readGamma(fileIn)\n", "\n", "# Data is set to a DataFrame\n", "gammaDF" ] }, { "cell_type": "code", "execution_count": 3, "id": "526cb920-d8c1-44f1-a9bb-8d49a349e677", "metadata": { "tags": [] }, "outputs": [ { "data": { "text/html": [ "
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gammabetaTermmatE1matE2BLMprodBLMnorm
LM
000.210977103.00000047.16721347.1672130.0274421.000000
200.277857140.73056196.71160296.7116020.0230760.840880
400.07951552.21338097.80834497.808344-0.007107-0.258995
600.012194-5.52834975.49879975.498799-0.010809-0.393870
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" ], "text/plain": [ " gamma betaTerm matE1 matE2 BLMprod BLMnorm\n", "L M \n", "0 0 0.210977 103.000000 47.167213 47.167213 0.027442 1.000000\n", "2 0 0.277857 140.730561 96.711602 96.711602 0.023076 0.840880\n", "4 0 0.079515 52.213380 97.808344 97.808344 -0.007107 -0.258995\n", "6 0 0.012194 -5.528349 75.498799 75.498799 -0.010809 -0.393870" ] }, "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Calculate beta parameters from these params.\n", "# This requires matrix elements.\n", "# If not set, arb or random values can be used.\n", "\n", "dfSum, dfProd = gammaCalc.betaCalc(gammaDF, rand=True, phase=False)\n", "\n", "# Sum output gives BLM from product and renormalised values\n", "dfSum" ] }, { "cell_type": "code", "execution_count": 4, "id": "3ab54646-405b-4cd9-8c0f-2958267ad3c4", "metadata": { "tags": [] }, "outputs": [ { "data": { "text/html": [ "
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gammabetaTermmatE1matE2BLMprod
l2lambda2l1lambda1LMml1ml2
000000000.0740741.0000000.2483370.2483370.004568
2-220000.0159231.0000000.0183150.2483370.000072
-120000.0191141.0000000.1678710.2483370.000797
020000.0039301.0000000.6082450.2483370.000594
120000.0191141.0000000.0991730.2483370.000471
.......................................
424260000.0006170.5042730.5985100.5985100.000111
00110.0003861.0000000.5985100.5985100.000138
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" ], "text/plain": [ " gamma betaTerm matE1 matE2 \\\n", "l2 lambda2 l1 lambda1 L M ml1 ml2 \n", "0 0 0 0 0 0 0 0 0.074074 1.000000 0.248337 0.248337 \n", " 2 -2 2 0 0 0 0.015923 1.000000 0.018315 0.248337 \n", " -1 2 0 0 0 0.019114 1.000000 0.167871 0.248337 \n", " 0 2 0 0 0 0.003930 1.000000 0.608245 0.248337 \n", " 1 2 0 0 0 0.019114 1.000000 0.099173 0.248337 \n", "... ... ... ... ... \n", "4 2 4 2 6 0 0 0 0.000617 0.504273 0.598510 0.598510 \n", " 0 0 1 1 0.000386 1.000000 0.598510 0.598510 \n", " 2 0 1 1 0.000386 0.493677 0.598510 0.598510 \n", " 4 0 1 1 0.000386 0.242757 0.598510 0.598510 \n", " 6 0 1 1 0.000386 -0.025214 0.598510 0.598510 \n", "\n", " BLMprod \n", "l2 lambda2 l1 lambda1 L M ml1 ml2 \n", "0 0 0 0 0 0 0 0 0.004568 \n", " 2 -2 2 0 0 0 0.000072 \n", " -1 2 0 0 0 0.000797 \n", " 0 2 0 0 0 0.000594 \n", " 1 2 0 0 0 0.000471 \n", "... ... \n", "4 2 4 2 6 0 0 0 0.000111 \n", " 0 0 1 1 0.000138 \n", " 2 0 1 1 0.000068 \n", " 4 0 1 1 0.000034 \n", " 6 0 1 1 -0.000003 \n", "\n", "[684 rows x 5 columns]" ] }, "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Full product DataFrame is also returned for further use\n", "# This includes all quantum numbers & associated values\n", "dfProd" ] }, { "cell_type": "code", "execution_count": null, "id": "2d121ff4-5556-47d0-af21-383c7b39305c", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "markdown", "id": "9f2c30e6-906f-486a-bbfa-f74cdee2a8d4", "metadata": {}, "source": [ "## Versions" ] }, { "cell_type": "code", "execution_count": 5, "id": "0b7f4a13-ae69-4188-b0a2-4530ee44b11a", "metadata": { "tags": [] }, "outputs": [ { "data": { "text/html": [ "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
Wed Jul 17 15:20:40 2024 EDT
OSLinuxCPU(s)64Machinex86_64Architecture64bit
RAM62.8 GiBEnvironmentJupyterFile systembtrfs
Python 3.10.11 | packaged by conda-forge | (main, May 10 2023, 18:58:44) [GCC 11.3.0]
epsproc1.3.2-devholoviews1.16.2hvplot0.8.4xarray2022.3.0
matplotlib3.5.3bokeh3.1.1numpy1.23.5scipy1.10.1
IPython8.13.2scooby0.7.2
" ], "text/plain": [ "\n", "--------------------------------------------------------------------------------\n", " Date: Wed Jul 17 15:20:40 2024 EDT\n", "\n", " OS : Linux\n", " CPU(s) : 64\n", " Machine : x86_64\n", " Architecture : 64bit\n", " RAM : 62.8 GiB\n", " Environment : Jupyter\n", " File system : btrfs\n", "\n", " Python 3.10.11 | packaged by conda-forge | (main, May 10 2023, 18:58:44)\n", " [GCC 11.3.0]\n", "\n", " epsproc : 1.3.2-dev\n", " holoviews : 1.16.2\n", " hvplot : 0.8.4\n", " xarray : 2022.3.0\n", " matplotlib : 3.5.3\n", " bokeh : 3.1.1\n", " numpy : 1.23.5\n", " scipy : 1.10.1\n", " IPython : 8.13.2\n", " scooby : 0.7.2\n", "--------------------------------------------------------------------------------" ] }, "execution_count": 5, "metadata": {}, "output_type": "execute_result" } ], "source": [ "import scooby\n", "scooby.Report(additional=['epsproc', 'holoviews', 'hvplot', 'xarray', 'matplotlib', 'bokeh'])" ] }, { "cell_type": "code", "execution_count": 6, "id": "15207b48-c566-40e2-8aad-6f73c82964af", "metadata": { "tags": [] }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "* \u001b[32m3d-AFPAD-dev\u001b[m\n", " dev\u001b[m\n", " master\u001b[m\n", "cca05a5f38f65cad56742febbf315169e468210f\n" ] } ], "source": [ "# Check current Git commit for local ePSproc version\n", "import epsproc as ep\n", "from pathlib import Path\n", "!git -C {Path(ep.__file__).parent} branch\n", "!git -C {Path(ep.__file__).parent} log --format=\"%H\" -n 1" ] }, { "cell_type": "code", "execution_count": 7, "id": "a6bb3f09-db2a-453c-93cd-318e06becd61", "metadata": { "tags": [] }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "4997e25699241d232d922f68cf0e8216ac14e6ee\trefs/heads/3d-AFPAD-dev\n", "18901ac6056324d6a2674396939fdcc373d35395\trefs/heads/dependabot/pip/notes/envs/envs-versioned/idna-3.7\n", "9d9eb4e1a20d4ff77d07af2ac782ba18c26e5dcc\trefs/heads/dependabot/pip/notes/envs/envs-versioned/jinja2-3.1.4\n", "226759a58ebe96bf1a6df60ccd5efb0c449af3a7\trefs/heads/dependabot/pip/notes/envs/envs-versioned/pillow-10.3.0\n", "de0e271701949602ce7f170a9665e37b27d2401c\trefs/heads/dependabot/pip/notes/envs/envs-versioned/requests-2.32.0\n", "4ff0ed84a1df2a3de4258ba7e49db1e47e6ac596\trefs/heads/dependabot/pip/notes/envs/envs-versioned/scipy-1.11.1\n", "120416a432b8da85b68912d0c424f47d77392434\trefs/heads/dependabot/pip/notes/envs/envs-versioned/tornado-6.4.1\n", "b50b0b946a1a7cb5b22c95d1e4cee120b22e6874\trefs/heads/dependabot/pip/notes/envs/envs-versioned/tqdm-4.66.3\n", "a96b411b4bbc911b35bf080b5e848dca655d0f1b\trefs/heads/dependabot/pip/notes/envs/envs-versioned/urllib3-1.26.19\n", "fd9c621f0c91e05ffcb097f59e9d8d8b43c5fc23\trefs/heads/dependabot/pip/scipy-1.11.1\n", "7e4270370d66df44c334675ac487c87d702408da\trefs/heads/dev\n", "1c0b8fd409648f07c85f4f20628b5ea7627e0c4e\trefs/heads/master\n", "69cd89ce5bc0ad6d465a4bd8df6fba15d3fd1aee\trefs/heads/numba-tests\n", "ea30878c842f09d525fbf39fa269fa2302a13b57\trefs/heads/revert-9-master\n", "baf0be0c962e8ab3c3df57c8f70f0e939f99cbd7\trefs/heads/testDev\n" ] } ], "source": [ "# Check current remote commits\n", "!git ls-remote --heads https://github.com/phockett/ePSproc" ] } ], "metadata": { "jupytext": { "formats": "ipynb,md:myst" }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.10.11" } }, "nbformat": 4, "nbformat_minor": 5 }